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Clinical Operations

Run the trial in simulation before you run it in people

Clinical Operations is a digital-twin trial planner. It builds a virtual population, runs your protocol against it, and tells you where the trial will struggle - eligibility criteria that exclude the patients you need, sites that will not enrol, timelines that will not hold - while the protocol can still be changed.

Distributions, not datesCounterfactual by designPlanning model, not advice
8
Operational capability areas
19
Specialised agents, one per operational domain
4,000
Simulated runs behind the distribution on this page
0
Single-point answers presented without a range

All platform outputs are planning models, not regulatory submissions or clinical advice. The simulation on this page runs at build time with the same discrete-event engine the product uses, on an illustrative protocol - and the eligibility model below it re-runs live as you change the criteria.

Clinical Ops · Command centre
Command centre: enrolment against plan, the site performance heatmap and the live risk registerPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamStudy STUDY-04 / Phase IIIStudy command centreLiveSearch the graphExport42 / 48Sites activated312 / 480Randomised28%Screen failure96Days to LPIEnrolment against planMONTH 7 OF 120240480TODAYM1M12PlanActualSimulated rangeBand is the simulated range the study was planned against.Site performanceVS PLANSITE-014SITE-027SITE-036SITE-041SITE-058M1M8Live risks3 OPENEnrolmentCriticalData qualityMaterialSupplyMonitor
Enrolment curve against plan, site performance heatmap, live risk register.

Key features

Eight ways a trial goes wrong, modelled before it does

Open a capability to see what it does and the screen it does it in. All eight read the same study record, so a criterion relaxed in the third changes the timeline in the seventh.

  • 01Protocol intelligence & design

    A structured protocol reviewed against comparable studies, with the elements that historically get amended flagged while they can still be rewritten.

    • Protocol drafting and structured review against comparable studies
    • Endpoint selection informed by regulatory and HTA precedent
    • Design comparison: parallel, crossover, adaptive, basket, platform
    • Complexity and burden scoring - every extra visit and procedure has a measurable cost in retention
    • Amendment-risk prediction: which elements of this protocol historically get amended
    Clinical Ops · Protocol designer
    Protocol designer: the structured protocol with complexity scoring and the elements that historically get amended flaggedPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamProtocol / STUDY-04 v0.7Protocol designerDraftComparedSearch the graphReviewStructure6 SECTIONS · 63 ELEMENTS1 Objectives & endpoints3 elements2 Study population5 elementsAmendment risk3 Eligibility criteria24 elementsAmendment risk4 Treatment & dosing7 elements5 Assessments & schedule18 elementsAmendment risk6 Statistical considerations6 elementsFlags are drawn from what got amended in comparable studies.ComplexityVS COMPARABLE68Above the comparable medianBurdenPER PATIENTVisits14Procedures per visit9Invasive assessments3Patient-reported outcomes2Every extra visit costs retention.
    Structured protocol with complexity scoring and flagged high-risk elements.
  • 02Digital twin trial simulator

    The core engine. A synthetic patient population, statistically consistent with the real disease population, run through your protocol.

    • Virtual patient cohort generation matched to the target indication
    • Full protocol execution in simulation: screening, randomisation, treatment, follow-up
    • Enrolment, dropout and completion trajectories
    • Statistical power under realistic - not idealised - operating conditions
    • Counterfactual runs: change one criterion, re-simulate, see the effect
    Clinical Ops · Digital twin
    Digital twin: simulated enrolment and completion curves with confidence bands across a thousand runsPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamSimulator / Run 1,000 pathsDigital twin42 sites480 patientsSearch the graphRe-runSimulated trajectories1,000 RUNSM1M18PlanEnrolledCompletedBand is the 10th to 90th percentile across runs - the honest partof the chart.OutcomeACROSS RUNSMedian completionMonth 14.2P10 — P9012.8 — 16.6Completers386 of 480Power at plan0.79CounterfactualONE CHANGERelax EXC-07 (prior therapy)Completion moves to month 12.6Re-simulateChange one criterion, re-run,compare against this baseline.
    Simulated enrolment and completion curves with confidence bands across 1,000 runs.
  • 03Eligibility optimisation

    What each exclusion actually costs you in population, ranked against how much risk it removes.

    • Criterion-by-criterion analysis of how much of the eligible population each exclusion removes
    • Cumulative eligibility funnel from disease population to randomisable patient
    • Identification of criteria that cost a great deal of population for very little risk reduction
    • Comparison against eligibility criteria used in comparable completed trials
    Clinical Ops · Eligibility analysis
    Eligibility analysis: what each criterion costs in population against the protection it buys, with the funnel beside itPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamEligibility / STUDY-04Eligibility24 criteriaRankedSearch the graphCost against protectionRANKED BY RATIOCRITERIONPOPULATION KEPTPROTECTIONEXC-07 Prior therapy46%HIGH COST, LOW PROTECTIONEXC-12 Renal function62%INC-03 Biomarker positive34%EXC-19 Prior malignancy78%HIGH COST, LOW PROTECTIONEXC-04 Concomitant meds70%INC-01 ECOG 0-166%Cumulative funnelTO RANDOMISEDDisease population182KMeets inclusions61KPasses exclusions24KReachable by a site9.4KConsents & randomised480Relaxing EXC-07 alone returns 18Kpatients to the reachable pool.
    Per-criterion population impact, with the highest-cost exclusions ranked.
  • 04Feasibility & recruitment intelligence

    Whether this design can recruit, where, how fast - and who else is competing for the same patients.

    • Feasibility scoring per indication, geography and design
    • Recruitment rate forecasting by site, country and season
    • Screen-failure rate prediction
    • Enrolment timeline projection with confidence ranges
    • Competing-trial analysis - who else is recruiting the same patients in the same places
    Clinical Ops · Feasibility
    Feasibility: the design-level feasibility score, its components, and the trials competing for the same patientsPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamFeasibility / Design v0.7Feasibility5 countriesSearch the graphFeasibility score0-10061Recruitable, with the design changedScreen failurePREDICTED28%Of consented patientsDriven mostly by the biomarkerconfirmation step.Components5 INPUTSPopulation availability0.72Site capacity0.64Competing trials0.38Regulatory pathway0.81Design complexity0.52Competing for the same patients3 TRIALSTRIAL-118Same indication · 3 shared sitesTRIAL-204Overlapping population · 5 sitesTRIAL-266Same line of therapy · 2 sites
    Design-level feasibility assessment.
    Clinical Ops · Recruitment
    Recruitment: forecast enrolment against plan, with the confidence range and the contribution by countryPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamFeasibility / EnrolmentRecruitment forecastBy countrySeasonalSearch the graphForecast against plan480 TARGET0120240360480M1M12Last patient in, forecast: month 13.4 (plan: month 12)6 weeks behindForecast carries the seasonal pattern each country actually shows.By countryPROJECTEDCTRY-114811 SITES · 3/SITE/MONTHCTRY-21129 SITES · 3/SITE/MONTHCTRY-3866 SITES · 2/SITE/MONTHCTRY-4584 SITES · 2/SITE/MONTHCTRY-5343 SITES · 2/SITE/MONTH438 of 480 by month 12
    Forecast enrolment against plan.
  • 05Site, investigator & country selection

    Sites ranked on what they have actually done before, and countries compared on how long they take to open.

    • Site scoring on historical enrolment performance, data quality and start-up speed
    • Investigator intelligence: trial history, therapeutic focus, publication record
    • Country intelligence: regulatory timelines, approval pathways, ethics-review duration, patient availability
    • Optimal site-mix recommendation with the trade-offs shown
    • Start-up timeline modelling per country
    Clinical Ops · Site selection
    Site selection: candidate sites ranked on the composite of enrolment history, data quality and start-up speedPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamSites / Candidate listSite selection128 screenedTop 6Search the graphAdd to mixRanked candidatesCOMPOSITE SCOREENROLMENT HISTORYDATA QUALITYSTART-UP SPEEDCOMPOSITESITE-0140.940.880.800.89SITE-0410.860.900.740.84SITE-0270.780.700.860.78SITE-0360.620.740.580.65SITE-0580.440.660.400.50SITE-0720.360.500.620.46Recommended mix32 sites across 5 countries · projected 13.4 months to LPITrade-off: cost vs speedCompare mixes
    Site matrix ranked on the composite score.
    Clinical Ops · Country intelligence
    Country intelligence: start-up timelines by country, broken into regulatory, ethics, contracting and activationPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamSites / Start-up timelinesCountry intelligenceMedian weeksSearch the graphStart-up by countryWEEKS TO FIRST PATIENTW0W13W26W39W52CTRY-118wCTRY-224wCTRY-330wCTRY-437wCTRY-547wRegulatoryEthics reviewContractingActivationCTRY-1 opens eleven weeks ahead of CTRY-5, and carries a third of the enrolment.Timelines are medians from comparable studies, not commitments.
    Start-up timeline comparison by country.
  • 06Risk simulation & monitoring

    The outcome as a distribution with its drivers named, then tracked against the plan once the trial opens.

    • Clinical risk simulation across enrolment, retention, data quality and timeline
    • Monte Carlo trial outcome distribution rather than a single projected date
    • Ongoing monitoring against the plan once the trial is live
    • Early-warning signals on sites and countries drifting off trajectory
    • Mitigation options modelled before they are needed
    Clinical Ops · Risk simulation
    Risk simulation: the distribution of completion dates across runs, with the dominant risk drivers rankedPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamRisk / 1,000 runsRisk simulationMonte CarloSearch the graphMitigateCompletion dateDISTRIBUTION, NOT A DATEP10P50P90M12M22Median month 14.2 · 90% of runs complete by month 16.6The plan assumes month 12, which 8% of runs reach.A date with no distribution behind it is a wish.Dominant driversBY CONTRIBUTIONSite activation slippage0.92Screen-failure rate0.74Competing trials0.58Dropout above plan0.44Supply interruption0.24Model a mitigation
    Outcome distribution across scenarios with the dominant risk drivers ranked.
  • 07Retention, timeline & budget

    Dropout modelled against protocol burden, and the timeline and budget that follow from it.

    • Dropout prediction by patient segment and protocol burden
    • Retention intervention modelling - what actually moves completion rates
    • Timeline forecasting across start-up, enrolment, treatment and readout
    • Trial cost estimation by phase, country and site
    • Budget sensitivity to the operational assumptions that most often move
    Clinical Ops · Retention
    Retention: completion modelled by segment against protocol burden, with the interventions that move itPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamRetention / By segmentRetention9 visitsSearch the graphStill in studyBY VISIT40%60%80%100%V1V9Low burdenStandardHigh burdenTwo extra procedures per visit cost 16 points of completion.Dropout is modelled against burden, not assumed flat.CompletionBY SEGMENTLow burden arm86%Standard arm74%High burden arm58%Travel > 90 min51%InterventionsMODELLEDRemote visits+7 ptsTravel reimbursement+4 ptsVisit window widening+3 ptsLift is on completion, not on consent.
    Dropout modelled by segment and burden.
    Clinical Ops · Budget
    Budget: the phased estimate with the sensitivity band each phase carriesPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamBudget / STUDY-04Trial budget5 countries32 sitesSearch the graphExportBy phaseSHARE OF TOTALStart-up18% of totalEnrolment34% of totalTreatment & follow-up29% of totalClose-out & reporting12% of totalContingency7% of totalWhiskers are the sensitivity to the assumptions that most often move.EstimateRANGE28.4MBase case, full study24.1M — 36.8MP10 — P90 ACROSS RUNSCost per randomised patient59.2KCost per site activated188KMoves the budgetRANKEDEnrolment durationSite countScreen-failure rateMonitoring intensity
    Phased budget estimate with sensitivity bands.
  • 08Statistical design, CRO and supply intelligence

    Power calculated under the operating conditions the simulation just produced, rather than under ideal ones.

    • Sample size and power calculation under simulated operating conditions
    • Adaptive design simulation with interim analysis planning
    • CRO capability and performance comparison by therapeutic area and geography
    • Clinical supply forecasting against enrolment scenarios
    • Regulatory readiness assessment ahead of submission
    Clinical Ops · Statistical design
    Statistical design: power against sample size under simulated dropout and screen-failure conditionsPrognicaCommandProtocolSimulatorEligibilityFeasibilitySitesRiskRetentionStatisticsResearch teamStatistics / PowerStatistical designSimulated1 interimSearch the graphPower against sample sizeTARGET 0.800.000.250.500.751.00POWER 0.80240720 randomisedIdeal conditionsSimulatedWorst caseIdeal conditions reach 0.80 at 384. Simulated conditions need 480.Power computed under the operating conditions the twin produced.AssumptionsEDITABLEEffect size0.35Alpha (two-sided)0.05Simulated dropout19%Screen failure28%Interim analyses1Required NTO 0.80480Randomised, simulated conditions667 screenedAT 28% SCREEN FAILUREAdaptive option
    Power curves under simulated dropout and screen-failure conditions.

Eligibility optimisation

Every criterion is a trade, and most protocols never price them

Switch a criterion off to see what it was costing. The funnel, the enrolment timeline and the screening burden all re-run - because a criterion that removes a fifth of your population is a schedule decision, not just a safety one.

Eligible fraction
8.9%
Randomisable patients in catchment
11,418
Months to last patient in
19.4 mo
Assessed per randomisation
18.1

Try

baseline
  • −23,040keeps 82%

    Defines the study population.

  • −56,678keeps 46%

    The mechanism only works in this subgroup - expensive, and load-bearing.

  • −13,519keeps 72%

    Standard, but it removes the patients with the most to gain.

  • −4,867keeps 86%

    Safety-driven, well supported by the mechanism.

  • −5,979keeps 80%

    Protects interpretability of the primary endpoint.

  • −5,262keeps 78%

    Renal clearance is minor for this compound - the cut-off is inherited, not derived.

  • −1,866keeps 90%

    Broadly written; a narrower version costs far less population.

  • −1,343keeps 92%

    Conventional, rarely justified against this endpoint.

  • −1,854keeps 88%

    Half-life supports 21 days; the extra week is habit.

  • −2,175keeps 84%

    Excludes a third of the real-world treated population.

Retention factors are typed heuristics drawn from the trial-methodology literature, not patient-level screen-fail rates - real screen-fail data needs EHR or claims access we do not have. Every factor here is a visible, adjustable assumption, which is the only honest way to publish one.

Digital twin

The plan is one line. The trial is the distribution around it.

Virtual patients arrive as a Poisson process whose per-site rate is drawn from a Gamma fitted to real completed trials; each patient's dropout time comes from a Weibull hazard. The timeline runs first-patient-in to last-patient-out to database lock. Switch variant to re-run the twin.

Forty-two sites, 480 patients, twelve months of follow-up.

4,000 runs · 42 sites · 480 patients

the plan · 28 monthsP10 22P50 30P90 53months to readout87+
Median readout
30 mo
One run in ten takes
53 mo
Finish later than the plan
52%
Over-enrol to hit completers
+151
  • 42 sites
  • 0.85 patients/site/month
  • 12-month follow-up

More sites, the same protocol - and a shorter tail than the plan expects, but not proportionally.

4,000 runs · 56 sites · 480 patients

the plan · 25 monthsP10 21P50 26P90 43months to readout69+
Median readout
26 mo
One run in ten takes
43 mo
Finish later than the plan
51%
Over-enrol to hit completers
+151
  • 56 sites
  • Same accrual rate per site
  • Start-up cost not modelled here

Fewer procedures per visit: accrual improves a little, retention improves a lot.

4,000 runs · 42 sites · 480 patients

the plan · 27 monthsP10 21P50 28P90 47months to readout75+
Median readout
28 mo
One run in ten takes
47 mo
Finish later than the plan
54%
Over-enrol to hit completers
+99
  • 0.98 patients/site/month
  • Weibull dropout scale 34 → 46
  • Same 42 sites

What is driving the spread

The composite operational risk, decomposed into the drivers it is built from.

  • Accrual variability between sites

    82

    The Gamma spread on per-site rate dominates every other input.

  • Eligibility restrictiveness

    71

    Ten criteria multiply into a 9% eligible fraction.

  • Dropout hazard

    54

    Drives over-enrolment, and therefore last-patient-in.

  • Country start-up spread

    46

    Ethics and contracting variance across the site mix.

  • Competing trials in the same catchment

    38

    Three active studies recruiting the same population.

Illustrative protocol parameters, simulated at build time with the same discrete-event engine the platform runs. A projected enrolment date without a confidence range is a guess wearing a suit.

Site & country selection

Rank sites on what they have actually done

The composite is enrolment track record, data quality and start-up speed, weighted 50 / 30 / 20. Sort by any column to see the trade-off it hides - the fastest starters are rarely the strongest enrollers.

Sort by

  1. ST-021

    Poland

    Enrol
    1.61/mo
    Quality
    79
    Start-up
    84d

    91

  2. ST-014

    Spain

    Enrol
    1.42/mo
    Quality
    88
    Start-up
    96d

    85

  3. ST-074thin history

    Türkiye

    Enrol
    1.55/mo
    Quality
    68
    Start-up
    92d

    84

  4. ST-045

    South Korea

    Enrol
    1.28/mo
    Quality
    91
    Start-up
    108d

    79

  5. ST-052

    Brazil

    Enrol
    1.34/mo
    Quality
    73
    Start-up
    121d

    73

  6. ST-061

    Australia

    Enrol
    0.78/mo
    Quality
    93
    Start-up
    74d

    72

  7. ST-009

    United Kingdom

    Enrol
    1.02/mo
    Quality
    90
    Start-up
    118d

    69

  8. ST-003

    United States

    Enrol
    0.94/mo
    Quality
    94
    Start-up
    132d

    64

  9. ST-030

    Germany

    Enrol
    0.86/mo
    Quality
    96
    Start-up
    148d

    59

  10. ST-038

    Japan

    Enrol
    0.69/mo
    Quality
    97
    Start-up
    162d

    51

Flagged: fewer than ten completed studies in this indication - scored, but not to be read as a track record.

Start-up, country by country

Days from country selection to first patient in, split into the three things that actually take the time.

  • Regulatory
  • Ethics review
  • Contracting & import
  • Australia

    74d

  • Poland

    84d

  • Spain

    96d

  • United Kingdom

    118d

  • United States

    132d

  • Germany

    148d

  • Japan

    162d

Data and AI

What the simulation is built from

DomainSources
Trials & operationsClinicalTrials.gov registry, status history, results postings, site and investigator records
Disease burdenPublished epidemiological literature and public health datasets
Evidence basePubMed / MEDLINE
Regulatory contextApproval records and published regulatory guidance
Therapeutic contextChEMBL, DrugBank, Open Targets

Simulations report distributions, not single answers. Termination reasons are kept verbatim rather than normalised away, because the reason a comparable trial stopped is the most useful sentence in its record.

Models

  1. Digital twin simulation engine

    Agent-based virtual patient populations executing the protocol under stochastic operating conditions.

  2. Monte Carlo methods

    Enrolment, dropout, timeline and outcome distributions.

  3. Survival and time-to-event models

    Recruitment and retention forecasting.

  4. Gradient-boosted ensembles

    Site performance, screen-failure and amendment-risk prediction.

  5. Retrieval-augmented language models

    Protocol review, precedent analysis and narrative generation, cited to registry and literature records.

  6. Nineteen specialised agents

    One per operational domain, each with its own evidence base and output contract.

How a study is planned

Seven stages, and the protocol is still editable in six of them

Select a stage to see what happens in it. Everything before "monitor" is reversible - which is the entire argument for simulating first.

Stage 1 of 7

Define — Indication, population, intervention, endpoints.

The study question, stated precisely enough to simulate: which patients, which intervention, which comparator, and what the primary endpoint has to detect. Endpoint choice is checked against regulatory and HTA precedent for comparable assets before anything downstream is built on it.

What it hands on

  • Study record
  • Endpoint set with precedent
  • Target population definition

Stage 2 of 7

Draft & review — Protocol structure with complexity and amendment-risk scoring.

A structured synopsis - arms, allocation, masking, schedule of assessments - reviewed against comparable completed studies. Complexity and burden are scored per visit, and the elements that historically attract amendments are flagged while the document is still a draft.

What it hands on

  • Structured synopsis
  • Complexity & burden score
  • Amendment-risk flags

Stage 3 of 7

Optimise eligibility — Criterion-level population impact analysis.

Each criterion is priced in population: how much of the eligible pool it removes, and how much risk it removes in exchange. Criteria that cost a great deal for very little are ranked, and compared against what comparable completed trials actually used.

What it hands on

  • Eligibility funnel
  • Cost-per-criterion ranking
  • Comparator-trial benchmark

Stage 4 of 7

Simulate — Digital twin runs across enrolment, retention and outcome scenarios.

A synthetic population consistent with the real disease population is run through the protocol thousands of times. Out comes a distribution of readout dates, a completion-rate estimate, the over-enrolment needed to hit the target, and statistical power under realistic operating conditions.

What it hands on

  • Readout distribution
  • Over-enrolment requirement
  • Power under operating conditions

Stage 5 of 7

Select — Countries, sites and investigators on modelled performance.

Sites scored on historical enrolment, data quality and start-up speed; investigators on trial history and therapeutic focus; countries on regulatory and ethics timelines. The recommended mix comes with its trade-offs shown, and thin evidence is flagged rather than smoothed over.

What it hands on

  • Ranked site list
  • Country start-up model
  • Recommended site mix

Stage 6 of 7

Forecast — Timeline, budget and supply against enrolment scenarios.

Start-up, enrolment, treatment and readout projected as ranges; cost estimated by phase, country and site; clinical supply forecast against the enrolment scenarios rather than against the plan. Budget sensitivity names the operational assumptions that move it most.

What it hands on

  • Phased timeline
  • Budget with sensitivity
  • Supply forecast

Stage 7 of 7

Monitor — Live tracking against the simulated plan once the trial opens.

The simulation becomes the baseline. Actual enrolment, screen-failure and retention are tracked against it, sites and countries drifting off trajectory raise early warnings, and mitigations are modelled before they are needed rather than after.

What it hands on

  • Plan-versus-actual tracking
  • Early-warning signals
  • Modelled mitigations

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